Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKIENPRENIAYELVNNGSKLTNENKQKILELAKKIK--------KEENIASILKKSGNNAKKILTITVSFNDQEEK
3GD5 Chain:A ((20-59))
-------------------DDLDEAQLHALLTLAHQLKRGERVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVI
General information:
TITO was launched using:
RESULT:
Template:
3GD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2714 for 97 contacts (28.0/contact) +
2D Compatibility (PS) -3545 + (NN) -2351 + (LL) 1168
1D Compatibility (HY) -3200 + (ID) 300
Total energy: -5514.0 ( -56.85 by residue)
QMean score : 0.702
(partial model without unconserved sides chains):
PDB file :
Tito_3GD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GD5-query.scw
PDB file :
Tito_Scwrl_3GD5.pdb
: