Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MVQF-LKENRAKRSLEI-----DSTVI-TLAIITLSLALVVYSVIKGVQKVAAKKT----------------DNILSEVESQ-KVVSPRQKV-----
2B1Y Chain:A ((4-104))
PNFRYTHYDLKELRAGTTLEISLSSVNNVRLMTGANFQRFTELLDFKYLGGVAKKSPIRIAVPETMHWHLIIDAEGHSGLAESSVKMLPAQPQATLTRKAS
General information:
TITO was launched using:
RESULT:
Template:
2B1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6161 for 216 contacts (-28.5/contact) +
2D Compatibility (PS) -7500 + (NN) 2541 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 850
Total energy: -13170.0 ( -60.97 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_2B1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B1Y-query.scw
PDB file :
Tito_Scwrl_2B1Y.pdb
: