Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDTPFKATSMEDLNDTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLENALEALIGAIYIDGGF-AN-VKKFVTKHWEERAKGMLS---LPQDPKTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKINNSEKTI
1YYO Chain:B ((5-220))
---------------EQLEKKLGYTFKDKSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFI------RIKRGKINETIIGDVFKALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLEES----
General information:
TITO was launched using:
RESULT:
Template:
1YYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84418 for 1539 contacts (-54.9/contact) +
2D Compatibility (PS) -23361 + (NN) -14430 + (LL) 1348
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -141111.0 ( -91.69 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1YYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YYO-query.scw
PDB file :
Tito_Scwrl_1YYO.pdb
: