Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MLSRVKVNKDNKNANSGKQARFDLNRMNFMINGKIVDKEYIIRLYGENNYLIPNGSEDYRLFAKRVFTGMFEYAKAEVPNNRILEKLVINCNQAGYEFAIYE
1C4Q Chain:A ((1-69))
TPDCVTGKVEYTKYND------------------------DDTFTVKVGDKELAT--NRANLQSLLLSAQITGMTVTIKTNACHNG-----------GGFSEVIFR
General information:
TITO was launched using:
RESULT:
Template:
1C4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4403 for 432 contacts (-10.2/contact) +
2D Compatibility (PS) -6830 + (NN) -871 + (LL) 2544
1D Compatibility (HY) -800 + (ID) 650
Total energy: -11010.0 ( -25.49 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_1C4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C4Q-query.scw
PDB file :
Tito_Scwrl_1C4Q.pdb
: