Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVN--DDGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
3MIO Chain:B ((4-204))
-------------LDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPM---------------TVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE
General information:
TITO was launched using:
RESULT:
Template:
3MIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129011 for 1613 contacts (-80.0/contact) +
2D Compatibility (PS) -20377 + (NN) -6477 + (LL) 1812
1D Compatibility (HY) -12800 + (ID) 4600
Total energy: -171453.0 ( -106.29 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_3MIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MIO-query.scw
PDB file :
Tito_Scwrl_3MIO.pdb
: