Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGE---DCAVLIISEID---QSKESVLVQ-EYTFTLETIARALINAKERSVDVEVILDKSQLHSKYSVINKLFSNGIPVWIDDKPKIAHNKVIIVD---NQKVITGSFNLTKTAKKGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
2O8R Chain:A ((509-653))
---------LLVARYNMGEAITNLIEREIENVKRGKRGYMLLKMNGLQDKNVITQLYRASEAGVEIDLIVRGICCLVPD--MP-Q-SRNIRVTRLVDMYLEHSRIWCFHNGGKEEVFISSADWMKRNLYNRIETACPVLD-PTLRREIIDILEIQLRDNIKACR
General information:
TITO was launched using:
RESULT:
Template:
2O8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36123 for 956 contacts (-37.8/contact) +
2D Compatibility (PS) -14681 + (NN) -1795 + (LL) 892
1D Compatibility (HY) -10400 + (ID) 1100
Total energy: -63207.0 ( -66.12 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2O8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O8R-query.scw
PDB file :
Tito_Scwrl_2O8R.pdb
: