Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKISKFVFLFLFCLGFNLQASGTLNIEEVITRKGFKFLFVENCDLPKVSLNISFKDAGYAYENVEKQGLTWFTSLAIQEGAGKNDAKDFAKKLEDKGISLNFIAGLEAFRASLNTLSENLEEAVSLLSDAIMHP---KVDLEGLNRAFEKAKVNFNNLEKD-PYFIAGKELNTLLFKKHPYSKSEYGILDTIMSITRDDVLAYVKRNFTKDNIVISVVGCTTKEEVSALLDKYLSKLPLKRSKVRKIPVKNNFGPAESKNIFMDIPQSVIFFAQKGIAYEDPDYYSASVLINALGGMG---LNSIL-----MKELRQNLGITYGVFAHIIPNKHGNAIVGNMSTDSS-TAGKAILAVKDTLSRIKREGIDEQLFKDAKTILVNNLTFFLSNN--TNTAMLLDDMQINDRDVNRINNYADIINDVKLEKVNELASSLLDPENLFFVKVGRNT |
| 3CX5 Chain:A ((2-411)) | --------------------------EVTQLSNGIVVATEHNPSAHTASVGVVFG-SGAANENPYNNGVSNLWKNIFLSKE-------NSAVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLK-KKAAFLGSEVRLRD-DTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEY-QLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLT-ISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQD--IAIAGTGQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3CX5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -125134 for 3268 contacts (-38.3/contact) +
2D Compatibility (PS) -42944 + (NN) -20930 + (LL) 3000
1D Compatibility (HY) -2800 + (ID) 2900
Total energy: -191708.0 ( -58.66 by residue)
QMean score : 0.461
|
|
|