Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHTGWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTN-VVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSANNISIYCAIIVKKVDEKTRQKTSINEILRD
3R8Y Chain:C ((91-217))
-------------------------------------------------------------------------------------------------------KARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGV---------------TVGKGAVVAAGAVVTEDVPPYTVVA-GTP----------ARVIK------------------
General information:
TITO was launched using:
RESULT:
Template:
3R8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119300 for 1059 contacts (-112.7/contact) +
2D Compatibility (PS) -14162 + (NN) -8840 + (LL) 11184
1D Compatibility (HY) -8800 + (ID) 2750
Total energy: -142668.0 ( -134.72 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3R8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R8Y-query.scw
PDB file :
Tito_Scwrl_3R8Y.pdb
: