Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLAKGKEMGKLEGKIALIAGASGGMGSAVAKRFVREGAYVILISRSIDNLKQLYDEIEKLDEFKEGSVKLIQLDLLDFENVKILANMIESLKLSESGALDILVACTGILGKL-NLVHDCELEELQNVMNTNFTANWYLLKNLDPVLKKSNSGRVIFMTSEVTLSPSSYPYWVPYAASKAALEIMVKIYASETKHTKLCVNAVYSEGPVDSEMYKQAFPGK-------DIS-EL-ILPNKLTDKFVELASEDCS-ISGQVLPLSKSLE
3TZQ Chain:B ((7-250))
---------AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-------GRGAVHHVVDLTNEVSVRALIDFTI----DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAA--YDMSTAYACTKAAIETLTRYVATQYGRHGVRCNA-IAPGLVRTPRLE---PQPIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSGLL
General information:
TITO was launched using:
RESULT:
Template:
3TZQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171884 for 1990 contacts (-86.4/contact) +
2D Compatibility (PS) -24790 + (NN) -10540 + (LL) 2208
1D Compatibility (HY) -6000 + (ID) 2700
Total energy: -213706.0 ( -107.39 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3TZQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TZQ-query.scw
PDB file :
Tito_Scwrl_3TZQ.pdb
: