Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSQSPKRMYGTGNNFVIIDSRSINNLNWNYREIA-----N-QNGCDQIIVITNSS--AADCFMHIYNADGGEVEMCGNAARCVGYLIMSEKST--EYATIELVNKRILECFKVGGRSIKVNMGKPLFKWHEIPLS-AKC-DPLHLPIELEMLKDPVAVNIGNPHMVFFVDNISEIPLQSLGPKLEKHTLFPKKVNVNIAQVEKSGEISLRVWERGTGITASCGSAACAALIASVLRGYLITRQTSVNLPGGKLLIEWPD---NIFMTGDIGFL |
| 2GKE Chain:A ((1-267)) | ---MQFSKMHGLGNDFVVVDGVTQN-VFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNM-VLTVKDDNQIRVNMGEPIWEPAKIPFTANKFEKNYILRTDI-QTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLL-NNNVQVDLPGGSLMIEWNGVGHPLYMTGEATHI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GKE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -208789 for 2276 contacts (-91.7/contact) +
2D Compatibility (PS) -27747 + (NN) -7106 + (LL) 556
1D Compatibility (HY) -18800 + (ID) 4400
Total energy: -266286.0 ( -117.00 by residue)
QMean score : 0.524
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