Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGALTGLWLSFTALSHLIIGGVIAAIPVMLLSAYYICDSIRKGKFSKK---DLFESYLCMLHKCH------DWS-WSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV-------
1LSL Chain:A ((1-113))
----------------QDGGWSHWSPWSSCS-----VTCGDGVITRIRLCNSPSPQMNGKPCEGEARETKACKKDACPINGGWGPWSPWDICSVTC-------GGGVQKRSRLCNNP-----------------------TPQFGGKDCVGDVTENQICNKQDC
General information:
TITO was launched using:
RESULT:
Template:
1LSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34273 for 481 contacts (-71.3/contact) +
2D Compatibility (PS) -9762 + (NN) 2885 + (LL) 4844
1D Compatibility (HY) 1200 + (ID) 1000
Total energy: -36106.0 ( -75.06 by residue)
QMean score : 0.034
(partial model without unconserved sides chains):
PDB file :
Tito_1LSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LSL-query.scw
PDB file :
Tito_Scwrl_1LSL.pdb
: