Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPTFLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKMLEEALSIVK------DTKTKLIGVTVLTSMSNEDL-SELGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIRVGFGHD--DQKRTATPKEAINSGADYIVIGRPITKSNSPANSAELILKSLS
2YYU Chain:B ((5-224))
-TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVTPGIR--FADDAA---RVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN
General information:
TITO was launched using:
RESULT:
Template:
2YYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145568 for 1687 contacts (-86.3/contact) +
2D Compatibility (PS) -23082 + (NN) -13661 + (LL) 336
1D Compatibility (HY) -15200 + (ID) 3950
Total energy: -201125.0 ( -119.22 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2YYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYU-query.scw
PDB file :
Tito_Scwrl_2YYU.pdb
: