Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK---DNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK
2GXG Chain:A ((32-136))
----ELNLSYLDFLVLRATS-DGPKTMAYLANRY----FVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEIT--------EKGLETFNKGIEI-YKKLANEVT--GDLSEDEVILVLDKISK-
General information:
TITO was launched using:
RESULT:
Template:
2GXG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53208 for 650 contacts (-81.9/contact) +
2D Compatibility (PS) -10468 + (NN) -674 + (LL) 1552
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -66798.0 ( -102.77 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_2GXG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GXG-query.scw
PDB file :
Tito_Scwrl_2GXG.pdb
: