Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYFNQSDKFEQLKKKILGISFNLPEGEEFTFHDLNSRANVQCSKAVQQNVGR-WFAYFVKHAPRVPFIIIGKDTHG-----------------HLVYLKTGPNPHYNSNPSKGGVR
1WGH Chain:A ((1-116))
GSSGSSGMSSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLPEPNSQGQRSGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1WGH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15896 for 471 contacts (-33.7/contact) +
2D Compatibility (PS) -10405 + (NN) -1269 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 1000
Total energy: -29770.0 ( -63.21 by residue)
QMean score : 0.272
(partial model without unconserved sides chains):
PDB file :
Tito_1WGH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WGH-query.scw
PDB file :
Tito_Scwrl_1WGH.pdb
: