Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVVNLIMTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
2K27 Chain:A ((24-70))
-------------RPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGS--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2K27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -553 for 255 contacts (-2.2/contact) +
2D Compatibility (PS) -5107 + (NN) -3965 + (LL) 5156
1D Compatibility (HY) -2800 + (ID) 450
Total energy: -7719.0 ( -30.27 by residue)
QMean score : 0.706
(partial model without unconserved sides chains):
PDB file :
Tito_2K27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K27-query.scw
PDB file :
Tito_Scwrl_2K27.pdb
: