Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSL-DKQKFKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRPTNGMT-VPDYVLQRFSNDEMVTMEKVIEHAARAIEKFV--ETSRFDHVMNEFNGEVK
3V2I Chain:A ((23-212))
IKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHLSSQQYWRLRIGIGHPRDMIPDVANFVLKPPRKEEQDVIDAAIERALAVMPAVVKGETER-------------
General information:
TITO was launched using:
RESULT:
Template:
3V2I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120652 for 1464 contacts (-82.4/contact) +
2D Compatibility (PS) -18503 + (NN) -2360 + (LL) 764
1D Compatibility (HY) -11600 + (ID) 3400
Total energy: -155751.0 ( -106.39 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3V2I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V2I-query.scw
PDB file :
Tito_Scwrl_3V2I.pdb
: