Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
1S3C Chain:A ((3-117))
NITIYHNPASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGISVRALLRKNVEPYEQLGLAED--KFTDDQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLDILQ-
General information:
TITO was launched using:
RESULT:
Template:
1S3C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63349 for 870 contacts (-72.8/contact) +
2D Compatibility (PS) -11966 + (NN) -744 + (LL) 440
1D Compatibility (HY) -7200 + (ID) 1050
Total energy: -83869.0 ( -96.40 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_1S3C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S3C-query.scw
PDB file :
Tito_Scwrl_1S3C.pdb
: