Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHLLETFEMSIDHQEDGLVVISMPVTDKVKQPFGYLHGGASIALGETACSLGSANLIDTTKFIPLGLEMNANHIHSAKDGRVTATAEIIHRGKSTHVWDIKIKNDKEQLITVMRGTVAIKPLK
4QD8 Chain:F ((33-140))
---------------DDESLTASMPVDSRTHQPFGLLHGGASVVLAESLGSMASYLCVDTSQYYCVGLEVNANHLRGLRSGRVTAVARAIHLGRTTHVWDIRLSGDDGKPSCIARLTMAVVPL-
General information:
TITO was launched using:
RESULT:
Template:
4QD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51978 for 793 contacts (-65.5/contact) +
2D Compatibility (PS) -11298 + (NN) 901 + (LL) 1584
1D Compatibility (HY) -7200 + (ID) 2450
Total energy: -70441.0 ( -88.83 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4QD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QD8-query.scw
PDB file :
Tito_Scwrl_4QD8.pdb
: