Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFISNNNITDPTLNLAMEEYVLKNLP-AEESYFLFYINRPSIIVGKNQNTIEEVNQTYIDAHNIDVVRRISGGGAVYHDTGNLNFSFI-TDDDGNSFHNFQKFTEPIVQALQSLGVNAE----------LTGRNDIQVGQAKISGNAMVKVKNRMFSHGTLMLNSDLDEVQNALKVNPAKIKSKGIKSVRKRVANIQEFLNDPLEIEEFKKIILKTIFGET---EVEEYKLTDEDWENIEKLSNDKYRTWAWNYGRNPKYNFEREEKFEKGFVQIKFDVKRGKIEHAKIFGDFFGVGDVTDLENALVGCLHDFEHIEEALSEYDLYHYFGDIDRHELIRLMS |
| 2C8M Chain:B ((16-255)) | -------------MSLAYDEAIYRSFQYGDKPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVL------------KSTRERVANVTDFVD--VSIDEVRNALIRG-FSETLHIDFREDTITEKEESLARELFDKKYSTEEWNMG--------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2C8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98635 for 1689 contacts (-58.4/contact) +
2D Compatibility (PS) -22420 + (NN) -5655 + (LL) 6904
1D Compatibility (HY) -16400 + (ID) 3650
Total energy: -139856.0 ( -82.80 by residue)
QMean score : 0.580
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