Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
4NAH Chain:C ((1-160))
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
General information:
TITO was launched using:
RESULT:
Template:
4NAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98816 for 1202 contacts (-82.2/contact) +
2D Compatibility (PS) -17322 + (NN) -7074 + (LL) 0
1D Compatibility (HY) -24400 + (ID) 8000
Total energy: -155612.0 ( -129.46 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_4NAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAH-query.scw
PDB file :
Tito_Scwrl_4NAH.pdb
: