Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLT-FSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
2JFP Chain:B ((27-277))
----IGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRS-SVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEFYTTGSAKMFEEIASSWLGI-----------
General information:
TITO was launched using:
RESULT:
Template:
2JFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -237763 for 2298 contacts (-103.5/contact) +
2D Compatibility (PS) -26651 + (NN) -6389 + (LL) 604
1D Compatibility (HY) -26000 + (ID) 6450
Total energy: -302649.0 ( -131.70 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_2JFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFP-query.scw
PDB file :
Tito_Scwrl_2JFP.pdb
: