Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
3D6C Chain:A ((9-141))
---------------------------------------------KEPATLIKAIDGDTVKLMYKGQPMTFRLLEVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
3D6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2164 for 1028 contacts (2.1/contact) +
2D Compatibility (PS) -14165 + (NN) -7559 + (LL) 3588
1D Compatibility (HY) -10000 + (ID) 2550
Total energy: -28522.0 ( -27.75 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3D6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D6C-query.scw
PDB file :
Tito_Scwrl_3D6C.pdb
: