Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
3Q8V Chain:D ((1-149))
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
General information:
TITO was launched using:
RESULT:
Template:
3Q8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80730 for 1121 contacts (-72.0/contact) +
2D Compatibility (PS) -16133 + (NN) -5419 + (LL) 0
1D Compatibility (HY) -20400 + (ID) 7450
Total energy: -130132.0 ( -116.09 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8V-query.scw
PDB file :
Tito_Scwrl_3Q8V.pdb
: