Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLN---KTEDFAKLVDQTTLDLTYKADKGQC-VILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
1KDP Chain:B ((8-222))
-----ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASED-ALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQ--
General information:
TITO was launched using:
RESULT:
Template:
1KDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58381 for 1634 contacts (-35.7/contact) +
2D Compatibility (PS) -22824 + (NN) -7421 + (LL) 940
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -105936.0 ( -64.83 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1KDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDP-query.scw
PDB file :
Tito_Scwrl_1KDP.pdb
: