Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRSLLFLTVLLLLFSFSSITNEVSASSSFDKGKYKKGDDASYFEPTGPYLMVNVTGVDSKGNELLSPHYVEFPIKP-GTTLTKEKIEYYVEWALDATA---YKEFRVVELDPSAKIEVTYYDKNKKKEETKSFPITEKGFVVPDLSEHIKNPGFNLITKVVIEKK
1BML Chain:C ((14-164))
-----------------------------------------------NNSQLVVSVAGTVEGTNQDISLKFFEIDLTSRPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASDATIT----DR-----NGKVYFADKDGSVTLP---TQPVQEFLLSGHVRVRPY
General information:
TITO was launched using:
RESULT:
Template:
1BML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41910 for 675 contacts (-62.1/contact) +
2D Compatibility (PS) -11520 + (NN) 313 + (LL) 3920
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -54697.0 ( -81.03 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_1BML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BML-query.scw
PDB file :
Tito_Scwrl_1BML.pdb
: