Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
2E55 Chain:D ((5-205))
------LSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPE-LKGKIVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAV-
General information:
TITO was launched using:
RESULT:
Template:
2E55.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176090 for 1621 contacts (-108.6/contact) +
2D Compatibility (PS) -21520 + (NN) -4071 + (LL) 660
1D Compatibility (HY) -17600 + (ID) 3750
Total energy: -222371.0 ( -137.18 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2E55.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E55-query.scw
PDB file :
Tito_Scwrl_2E55.pdb
: