Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
2QQE Chain:B ((2-174))
------SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-----------------VEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVA-----ID-----VGGQEKYIAVCR---------------
General information:
TITO was launched using:
RESULT:
Template:
2QQE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72518 for 1159 contacts (-62.6/contact) +
2D Compatibility (PS) -16145 + (NN) -3363 + (LL) 2468
1D Compatibility (HY) -12000 + (ID) 2800
Total energy: -104358.0 ( -90.04 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_2QQE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QQE-query.scw
PDB file :
Tito_Scwrl_2QQE.pdb
: