Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MFQTKEEWGGFDELEIRYSDKALANTNTLDIK---DTQMISIALEEVEEVEVKVCCVDSQSI----KVGLFKDGQLIYESEVEKL-----------
2KMC Chain:A ((-5-96))
TMLSSGDLTSASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQHKM
General information:
TITO was launched using:
RESULT:
Template:
2KMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12850 for 371 contacts (34.6/contact) +
2D Compatibility (PS) -7865 + (NN) 1964 + (LL) 0
1D Compatibility (HY) 5600 + (ID) 100
Total energy: 12449.0 ( 33.56 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_2KMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KMC-query.scw
PDB file :
Tito_Scwrl_2KMC.pdb
: