Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METIEWNEEQR-----KAFQDLLREFVALIDAKVQEKKQMGKKPKIPKYASCQNGLNKFLAPWGYACKISLGTGLLSHEPSIAFCRQDILGEGFVNGEKPTPTKGFYLWFAYYWRNDLEKIDLCIGRSDEEDKKEECQKCLAYDKIIPNRNECYREL
2V1O Chain:A ((1-149))
-GAMRIMRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQNGERCVAALARVERTDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSENILTGTKKLTNKATLWYVPLSLKNVDKVLEVPPIVYLRQEQEEEGRKRYEAQKLERME-------
General information:
TITO was launched using:
RESULT:
Template:
2V1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30693 for 1044 contacts (-29.4/contact) +
2D Compatibility (PS) -15276 + (NN) -5601 + (LL) 760
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -53110.0 ( -50.87 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_2V1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V1O-query.scw
PDB file :
Tito_Scwrl_2V1O.pdb
: