Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRV--FVFPDFLGL------LPNAFLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLEN-----IDLNYSNLIVAYEPIWAIGTKKSASLEDIY-LTHGFLKQILNQKTP-------LLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
3GVG Chain:B ((31-276))
------GNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNI--EQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIA
General information:
TITO was launched using:
RESULT:
Template:
3GVG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112557 for 1790 contacts (-62.9/contact) +
2D Compatibility (PS) -23625 + (NN) -7886 + (LL) 1028
1D Compatibility (HY) -14800 + (ID) 3950
Total energy: -161790.0 ( -90.39 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3GVG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVG-query.scw
PDB file :
Tito_Scwrl_3GVG.pdb
: