Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRELMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENAHNEIAFFFAAREF
3VGS Chain:A ((4-137))
--ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDLVGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPESAAREIAYFFEESEI
General information:
TITO was launched using:
RESULT:
Template:
3VGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57462 for 1052 contacts (-54.6/contact) +
2D Compatibility (PS) -14019 + (NN) -551 + (LL) 272
1D Compatibility (HY) -11600 + (ID) 4450
Total energy: -87810.0 ( -83.47 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3VGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VGS-query.scw
PDB file :
Tito_Scwrl_3VGS.pdb
: