Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMREILTNRFFPSLFKKRLDFSNRVVLGLGSNLKNPLKILKSCFLYFKNHSKIGKIFSSPIYINPPFGYTNQPNFYNATIILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAFNQVILRQNDLTLPHPKWSERDSVLVPLTLQQILFKREEW
3UDV Chain:A ((5-128))
--------------------------IAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGR----E-RWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDG
General information:
TITO was launched using:
RESULT:
Template:
3UDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79528 for 858 contacts (-92.7/contact) +
2D Compatibility (PS) -12959 + (NN) -9768 + (LL) 2852
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -108153.0 ( -126.05 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3UDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDV-query.scw
PDB file :
Tito_Scwrl_3UDV.pdb
: