Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMNAIRWPKKWIPGETDNFVSNEVIVKGLDFNKVVQHLRDASHWEKYYKNSGNIHMYHQDNTILKDKTRFCFETF--GF--LVEAEVEEFELKDAILRLAWRGWNEAKGDEYLEVYHAWLVEKLDN-DRVRILTQESQSGVPAKALAKSVPNAMLNGHQAWLDGLVAYSR
3GGN Chain:A ((3-144))
-------------------TVVRDAV-TIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLD---D---KRSRWTVEAPAPLGTVSWEAELTADEP---GKRIAWRSLP-GA---RIENSGEVLFRPAPGARGTEVVVRLTYR-------------EPSQQLRDDLMRFKREQE
General information:
TITO was launched using:
RESULT:
Template:
3GGN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41015 for 859 contacts (-47.7/contact) +
2D Compatibility (PS) -13115 + (NN) -432 + (LL) 2424
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -55438.0 ( -64.54 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_3GGN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GGN-query.scw
PDB file :
Tito_Scwrl_3GGN.pdb
: