Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCI-TAQNTQGVHGVYPLSVESVKAQI---LAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDD-KSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIGHGHGPLNLWSIKKHV
4C5N Chain:D ((5-259))
-----KVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDTWSHDVTPLPMDVFEKQLETALSIGPD----AIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVC-------NPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKA--LDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRIE
General information:
TITO was launched using:
RESULT:
Template:
4C5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159237 for 2186 contacts (-72.8/contact) +
2D Compatibility (PS) -27095 + (NN) -13618 + (LL) 1420
1D Compatibility (HY) -12400 + (ID) 4100
Total energy: -215030.0 ( -98.37 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4C5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C5N-query.scw
PDB file :
Tito_Scwrl_4C5N.pdb
: