Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIFLKKSLCALLISGFFIPPLMKAASFVYDLKFMSFNFNLASPPNNP------YWNSLTKMQGRLMPQI-GVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQY-IGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNANSHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKDNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYLYKNKWLSVRADAFFSFVGGGDGYHLYGKGGKWFVMY-QQFLTLTIDTRELIDFVKSKIPK-- |
| 4USR Chain:A ((1-357)) | GPAMPPILDVIVIGG-----GQAALTTAYFLRRTSLSYLLLDEQPGPGGAWLHAWDSLRLFSPAAWSSIAGWPMPSPTE--------PGNPTRNDVIDYLRRYEDRYQFPIQRPVR--VDTVTRLDDLWRVQAGDQQWLARAVISATGTWSKPFIPPYEGRELFQGAQIHSAHY-------RTPAPFAGKRVMVVGGGNSGAQVLAELSSVSETLWITQEPPAF-----LPDEVDGRVLFERATARWKAQQE-GRSIDEPAGG-FGDIVMVPPVREARERGVLVAE--RPFARFTETGVEWADGRRENLDAVIWCS------------GFRPALDHLRELGVVEAD--------------GKVQVEDTRVVKQPNLWLVGY--------------------------------GDWTGMASATLIGVTRTARSTADQVVQALTATP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4USR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151216 for 2830 contacts (-53.4/contact) +
2D Compatibility (PS) -35675 + (NN) -3377 + (LL) 4136
1D Compatibility (HY) -5200 + (ID) 3000
Total energy: -194332.0 ( -68.67 by residue)
QMean score : 0.154
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