Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
M-------------------------KRFDLRPLKADIFERLEELIEKEMQPNEVAIFMFEVGDFSNIPKSAEFIQSKGHELLNSLRFNQADWTIVVRKKA
1JDQ Chain:A ((1-98))
GSSHHHHHHSSGLVPRGSHMAKYQVTKTLDVRGEVCPVPDVETKRALQNMKPGEILEVWID-Y-PMSKERIPETVKKLGHEVLEIEEVGPSEWKIYIKVK-
General information:
TITO was launched using:
RESULT:
Template:
1JDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4774 for 434 contacts (-11.0/contact) +
2D Compatibility (PS) -7894 + (NN) -1451 + (LL) 260
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -16559.0 ( -38.15 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1JDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JDQ-query.scw
PDB file :
Tito_Scwrl_1JDQ.pdb
: