Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDSLALA------SSKQEIEKLKEIFIATSEYEYQFWDMAYQS
3MVU Chain:A ((7-226))
GKAFSLMRAEAEPAWRAYTHHAFVEGLKAGTLPREAFLHYLQQDYVFLIHFSRAWALAVVKSETHSEMLAAVGTVNALVAEEMQLHIGICEASGISQEALFATRERAENLAYTRFVLEAGYSGDLLDLLAALAPCVMGYGEIGKRLTAEA---TSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAEFTSSPRWSRLCQTFHTATELEVGFWQMGLTP
General information:
TITO was launched using:
RESULT:
Template:
3MVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152227 for 1719 contacts (-88.6/contact) +
2D Compatibility (PS) -22808 + (NN) -8077 + (LL) 240
1D Compatibility (HY) -14400 + (ID) 2900
Total energy: -200172.0 ( -116.45 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_3MVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MVU-query.scw
PDB file :
Tito_Scwrl_3MVU.pdb
: