Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWVEDNPNDGSKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLCTTHIHMDEHNCLETIILQGNSLEIQRLQLEIGGLRGVKFAKLTKASSFEYNE
2WVD Chain:D ((8-145))
-------DSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDHHQRELNQRMIDIQHASGTHVLSTTHIHMDEHNCLETIILQGNSFEIQRLQLEIGGLRGVKFAKLTKASSFE---
General information:
TITO was launched using:
RESULT:
Template:
2WVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49087 for 839 contacts (-58.5/contact) +
2D Compatibility (PS) -15613 + (NN) -9048 + (LL) 68
1D Compatibility (HY) -18400 + (ID) 6700
Total energy: -98780.0 ( -117.74 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2WVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WVD-query.scw
PDB file :
Tito_Scwrl_2WVD.pdb
: