Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSSNDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEVNEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW
1GDT Chain:A ((149-181))
----------------------------------------------------------------------------------------------------------------------------------DAVLNMWQQGLGASHISKTMNIARSTVYKVINESN---
General information:
TITO was launched using:
RESULT:
Template:
1GDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17415 for 199 contacts (-87.5/contact) +
2D Compatibility (PS) -3441 + (NN) 360 + (LL) 10980
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -13216.0 ( -66.41 by residue)
QMean score : 0.683
(partial model without unconserved sides chains):
PDB file :
Tito_1GDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GDT-query.scw
PDB file :
Tito_Scwrl_1GDT.pdb
: