Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDELRAEKSFPSKPYDSLKNKSEFDRVYRKGFKKHNPFFSLFVLDLSKEPPKEKEGFKDPLSCRLKDRNTLCLLGLSVSKKVGNAVKRNLIKRRLRSLVTRHAALCQGFALVFVPRSDCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKKGMTHTHAKQ
1D6T Chain:A ((1-115))
----------MLLEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKE--------------------IDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK--------------
General information:
TITO was launched using:
RESULT:
Template:
1D6T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82150 for 900 contacts (-91.3/contact) +
2D Compatibility (PS) -12351 + (NN) -5401 + (LL) 2176
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -104426.0 ( -116.03 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1D6T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D6T-query.scw
PDB file :
Tito_Scwrl_1D6T.pdb
: