Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGY----FDFWNC-AIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNA-GFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLELV
1E9N Chain:B ((62-317))
LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS--EGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA
General information:
TITO was launched using:
RESULT:
Template:
1E9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150259 for 2090 contacts (-71.9/contact) +
2D Compatibility (PS) -26938 + (NN) -11490 + (LL) 268
1D Compatibility (HY) -24400 + (ID) 6200
Total energy: -219019.0 ( -104.79 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1E9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1E9N-query.scw
PDB file :
Tito_Scwrl_1E9N.pdb
: