Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRKLIQFLFIAVVLFLVEYVLINQAAILFLVTSGIIQLCGVIIAIRLLLFDQRNTSSKVAWVAVIFILPVLGTISYLVFGRNPATRKFSTAQVKEKTKLINAIHAIPNNTNEKLPRLSKRIAHLTSIEPIKGNKIEILTNGEETFPVLLDALRKAENHIHIQYYIFKTDAISTEIRDILVEKAKSGVEVRFMFDGLGSSK-LGKAFLAPLKEAGVSIHAFDPIASPWIVRTANLRNHRKIVVIDGQ---IGFTGGLNIGEEYRSNTPDFRVWRDTHIKITGQAVIELQESFLNDWVYMENQAGAADGFISESGSKQYFSPVDMGDEWAQVIYGGPYDKEKWVRDSMLDLIDSAKESVWIVSPYFVPDEESLAVIRRVAMSGVDVRVIIPGKGDRGISFHGSNAYVKTMIEAGAKMYAYADDSFVHAKAMLVDGTRAAIGTANFDVRSFRLNHELMVFLYDESEAMHHLKRDFKKDFEDSRLFTMKDMENKPLLTRIKEVLSSLLSPIL |
2C1L Chain:A ((23-144)) | -----------------------------------------------------------------------------------------------------------------------------------------------LENVWVSNHTPGEGTLYLISGFSNYNGG-VRFYETFTEHINQGGRVIAILGGSTSQRLSSRQVVEELLNRGVEVHIINR----------KRILHAKLYGTSNNLGESLVVSSGNFTGPGMSQN------IEASLLLDNN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2C1L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78394 for 882 contacts (-88.9/contact) +
2D Compatibility (PS) -12791 + (NN) -3858 + (LL) 30860
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -66933.0 ( -75.89 by residue)
QMean score : 0.405
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