Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILELDGQ--MVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI
4R87 Chain:H ((5-171))
-NSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVE-DAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKY-----
General information:
TITO was launched using:
RESULT:
Template:
4R87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96461 for 1157 contacts (-83.4/contact) +
2D Compatibility (PS) -17524 + (NN) -5934 + (LL) 924
1D Compatibility (HY) -22000 + (ID) 4850
Total energy: -145845.0 ( -126.05 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4R87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R87-query.scw
PDB file :
Tito_Scwrl_4R87.pdb
: