Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYQMKNK-LQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVS--WPVG-GEL--KPDGEHWTFTAEAINIATTFLKSEGIELTPVKMIIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNGSCG-DIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEP-VP-TFSVGWTGTPVST------------GKLVSQIHAFKQ------EDSKNYQH---------FLTR----N--NEIMKQIIQAFHTKDEELLYSAIKENRRILQELGTKAGVNIETSLLKELADSAEN-MGG-AGKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHTGRVQITE |
| 1PIE Chain:A ((41-391)) | VFGDTKEVEYFFSPGRINLIGEHTDYN-GGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGAG---YEIDKGFELLIKGEIPT----ASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT--------------------LKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYE-----VTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDN-VSAFRKAVG------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PIE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108200 for 2563 contacts (-42.2/contact) +
2D Compatibility (PS) -32983 + (NN) -17221 + (LL) 3620
1D Compatibility (HY) -2800 + (ID) 2450
Total energy: -160034.0 ( -62.44 by residue)
QMean score : 0.443
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