Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTQNNKSNAAHAEGGIPWKHIV---------GFALSVVLTLLAVWVALYSTL--------TTNVKVVIIFIFAFIQAALQLL---MFMHMTEGRDGKIQIG------NILFAAFIAIVVVIGSYWVMEIGHMNHLL-----------------
2GIA Chain:A ((27-192))
WRRPSLAQQRARRAQLPPAFDVVHWNDEDISRGHLLRVLHRDTFVVLDYHRQARMLTEEGNKAERVVSVMLPAVYTARFLAVLEGRSEKVEVHSRYTNATFTPNPAAPYTFTLKCTSTRPDETFEWTVEFDVAESLMLQRFLTQALHYNTGFAR
General information:
TITO was launched using:
RESULT:
Template:
2GIA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96864 for 672 contacts (-144.1/contact) +
2D Compatibility (PS) -12429 + (NN) -2273 + (LL) 0
1D Compatibility (HY) 2000 + (ID) 700
Total energy: -110266.0 ( -164.09 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_2GIA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GIA-query.scw
PDB file :
Tito_Scwrl_2GIA.pdb
: