Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSRKKGIILVLSVILIFSIGLLVNNLMTNNKDTAKPKKKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVL---AEKGMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQE-FWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAALRANNLAYVGAGKNEDEA-----YQL-KVADIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGYDLNLVEEKIKEERAKNKDIDYMVVYFHWGVEKTNTPVD-------YQTQYVKKLVDDNLVDAIVASHPHWLQGFEV-YKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFDQGKVTAHFDPGIISGNQINMLEGSSKTAQLNYLQSISPNATINSNGDISAK |
| 3IVE Chain:A ((4-250)) | -------------------------------------------------------AKDVTIIYTNDLHAHVEPYKVPWIADGKRDIGGWANITTLVKQE--KAKNKATWFFDAGDYFTGPYISSLTKGKAIIDIMNTMPFDAVTIG-NHEFDHGWDNTLL---QLSQAKFPIVQGNIFYQNSSKSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRYIDE-L--KGKVDLTVALIHEGVPARQSSM-DVRRALDKDIQTASQ--VKG-LDILITGHAHVGTPEPIKVGNTLIL------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54800 for 1843 contacts (-29.7/contact) +
2D Compatibility (PS) -24075 + (NN) -8659 + (LL) 7752
1D Compatibility (HY) -7200 + (ID) 1750
Total energy: -88732.0 ( -48.15 by residue)
QMean score : 0.335
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