Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTF----TNQQGEREADFINCVVWRK-PAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAES----VQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF
3PGZ Chain:B ((26-136))
-LNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKER-TEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLD--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PGZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47479 for 624 contacts (-76.1/contact) +
2D Compatibility (PS) -11049 + (NN) -1460 + (LL) -1596
1D Compatibility (HY) -8400 + (ID) 1850
Total energy: -71834.0 ( -115.12 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3PGZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PGZ-query.scw
PDB file :
Tito_Scwrl_3PGZ.pdb
: