Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LAKNTHMNVTVDFTNWGASKYDLRIPVHQPIKALIINLAETLKIDYKDLSKCTIKTTNKA-----IL-------LSDDDKLTNFQIADGDILEIL-
4KV2 Chain:A ((3-92))
-MATTRVTILT-----GRRMTDLVLPAAVPMETYIDDTVAVLSEVLEDTPADVLGGFDFTAQGVWAFARPGSPPLKLDQSLDDAGVVDGSLLTLVS
General information:
TITO was launched using:
RESULT:
Template:
4KV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42566 for 488 contacts (-87.2/contact) +
2D Compatibility (PS) -8029 + (NN) -2103 + (LL) 360
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -56288.0 ( -115.34 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_4KV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KV2-query.scw
PDB file :
Tito_Scwrl_4KV2.pdb
: