Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----VTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEKTKVCVTDWFYGSQEAVLENSNDVVVRINRKALLLNYSMFPFLFYGFVMTSLFATLIALGLCLVSFFYSRKHWFEFVKIK
2PFU Chain:A ((43-141))
MDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVT--DETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQA---------------------GYLKIGLVGEETAKAK-----
General information:
TITO was launched using:
RESULT:
Template:
2PFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2198 for 496 contacts (-4.4/contact) +
2D Compatibility (PS) -10298 + (NN) -3922 + (LL) 3240
1D Compatibility (HY) 800 + (ID) 450
Total energy: -12828.0 ( -25.86 by residue)
QMean score : 0.168
(partial model without unconserved sides chains):
PDB file :
Tito_2PFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PFU-query.scw
PDB file :
Tito_Scwrl_2PFU.pdb
: