Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKNLYNYQEFIRLSHEGKIAYEQIDVPKNASLLTEKIDIDNHIYLVVDGYIALILNDGSQNSKIYSIQGKGTFLNYFTLLDQSNNHFNFKTLSGCSLYKYSKADMEYFLSMFPENFGFQFFIMKNQTTHVYFKS-LMASSPASEKLKTTFSNMALLHGVLSDDGTVILPQAIKTSHLLSYSNLSKSCFYKDLQYLKTTNQIEKKEKCWIIHDQALYTMIQNGQTSF
3E6C Chain:C ((28-229))
-----------------YTQMGLIRDFAKGSAVIMPGEEI-TSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPTG---NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYELCSSQGKRVGD-TYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQT---
General information:
TITO was launched using:
RESULT:
Template:
3E6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91778 for 1377 contacts (-66.7/contact) +
2D Compatibility (PS) -21323 + (NN) -3029 + (LL) 1208
1D Compatibility (HY) -6000 + (ID) 1200
Total energy: -122122.0 ( -88.69 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_3E6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E6C-query.scw
PDB file :
Tito_Scwrl_3E6C.pdb
: